|Title||Aggregate entropy scoring for quantifying activity across endpoints with irregular correlation structure.|
|Publication Type||Journal Article|
|Year of Publication||2016|
|Authors||Zhang, G, Marvel, S, Truong, L, Tanguay, RL, Reif, DM|
|Date Published||2016 Jul|
Robust computational approaches are needed to characterize systems-level responses to chemical perturbations in environmental and clinical toxicology applications. Appropriate characterization of response presents a methodological challenge when dealing with diverse phenotypic endpoints measured using in vivo systems. In this article, we propose an information-theoretic method named Aggregate Entropy (AggE) and apply it to scoring multiplexed, phenotypic endpoints measured in developing zebrafish (Danio rerio) across a broad concentration-response profile for a diverse set of 1060 chemicals. AggE accurately identified chemicals with significant morphological effects, including single-endpoint effects and multi-endpoint responses that would have been missed by univariate methods, while avoiding putative false-positives that confound traditional methods due to irregular correlation structure. By testing AggE in a variety of high-dimensional real and simulated datasets, we have characterized its performance and suggested implementation parameters that can guide its application across a wide range of experimental scenarios.
|Alternate Journal||Reprod. Toxicol.|
Aggregate entropy scoring for quantifying activity across endpoints with irregular correlation structure.
Submitted by Benjamin Tate on Tue, 2016-10-18 10:51